bsbΒΆ
- bsb package
- Subpackages
- bsb.cli package
- bsb.config package
- bsb.topology package
- bsb.morphologies package
- bsb.placement package
- bsb.connectivity package
- bsb.simulation package
- Submodules
- bsb.simulation.simulation module
- bsb.simulation.adapter module
- bsb.simulation.cell module
- bsb.simulation.component module
- bsb.simulation.connection module
- bsb.simulation.device module
- bsb.simulation.parameter module
- bsb.simulation.results module
- bsb.simulation.targetting module
- Module contents
- bsb.services package
- bsb.storage package
- Submodules
- bsb.core module
ReportListenerScaffoldScaffold.after_connectivityScaffold.after_placementScaffold.attrScaffold.cell_typesScaffold.clear()Scaffold.clear_connectivity()Scaffold.clear_placement()Scaffold.compile()Scaffold.configurationScaffold.connectivityScaffold.create_entities()Scaffold.create_job_pool()Scaffold.filesScaffold.get_cell_types()Scaffold.get_config_diagram()Scaffold.get_connectivity()Scaffold.get_connectivity_set()Scaffold.get_connectivity_sets()Scaffold.get_dependency_pipelines()Scaffold.get_placement()Scaffold.get_placement_of()Scaffold.get_placement_set()Scaffold.get_placement_sets()Scaffold.get_simulation()Scaffold.get_storage_diagram()Scaffold.is_main_process()Scaffold.is_worker_process()Scaffold.merge()Scaffold.morphologiesScaffold.networkScaffold.partitionsScaffold.place_cells()Scaffold.placementScaffold.regionsScaffold.register_listener()Scaffold.register_pool_cached_item()Scaffold.remove_listener()Scaffold.require_connectivity_set()Scaffold.resize()Scaffold.run_after_connectivity()Scaffold.run_after_placement()Scaffold.run_connectivity()Scaffold.run_pipelines()Scaffold.run_placement()Scaffold.run_placement_strategy()Scaffold.run_simulation()Scaffold.simulationsScaffold.storageScaffold.storage_cfg
from_storage()
- bsb.cell_types module
CellTypePlacementIndicationsPlacementIndications.countPlacementIndications.count_ratioPlacementIndications.densityPlacementIndications.density_keyPlacementIndications.density_ratioPlacementIndications.geometryPlacementIndications.get_node_name()PlacementIndications.local_count_ratioPlacementIndications.morphologiesPlacementIndications.planar_densityPlacementIndications.radiusPlacementIndications.relative_toPlacementIndications.scaffold
Plotting
- bsb.exceptions module
AdapterErrorAllenApiErrorAttributeMissingErrorBootErrorCLIErrorCastConfigurationErrorCastErrorCfgReferenceErrorChunkErrorCircularMorphologyErrorClassErrorClassMapMissingErrorCodeImportErrorCommandErrorCompartmentErrorCompilationErrorConfigTemplateNotFoundErrorConfigurationErrorConfigurationFormatErrorConfigurationWarningConnectivityErrorConnectivityWarningContinuityErrorDataNotFoundErrorDataNotProvidedErrorDatasetExistsErrorDatasetNotFoundErrorDependencyErrorDistributionCastErrorDistributorErrorDryrunErrorDynamicClassErrorDynamicClassInheritanceErrorDynamicObjectNotFoundErrorEmptyBranchErrorEmptySelectionErrorEmptyVoxelSetErrorExternalSourceErrorFileImportErrorFileReferenceErrorGatewayErrorIncompleteExternalMapErrorIncompleteMorphologyErrorIndicatorErrorInputErrorIntersectionDataNotFoundErrorInvalidReferenceErrorJobCancelledErrorJobPoolContextErrorJobPoolErrorJobSchedulingErrorLayoutErrorMissingActiveConfigErrorMissingMorphologyErrorMissingSourceErrorMorphologyDataErrorMorphologyErrorMorphologyRepositoryErrorMorphologyWarningNoReferenceAttributeSignalNodeNotFoundErrorNoneReferenceErrorOptionErrorPackageRequirementWarningPackingErrorPackingWarningParameterErrorParserErrorPlacementErrorPlacementRelationErrorPlacementWarningPluginErrorReadOnlyOptionErrorRedoErrorReificationErrorRequirementErrorScaffoldErrorScaffoldWarningSelectorErrorSimulationErrorSourceQualityErrorStorageErrorTopologyErrorTreeErrorTypeHandlingErrorUnfitClassCastErrorUnknownConfigAttrErrorUnknownGIDErrorUnknownStorageEngineErrorUnmanagedPartitionErrorUnresolvedClassCastErrorVoxelSetError
- bsb.exceptions module
- bsb.option module
- bsb.options module
ProfilingOptionProfilingOption.cliProfilingOption.descriptionProfilingOption.envProfilingOption.get_default()ProfilingOption.getter()ProfilingOption.inverted_flagProfilingOption.is_flagProfilingOption.nameProfilingOption.positionalProfilingOption.projectProfilingOption.readonlyProfilingOption.scriptProfilingOption.setter()ProfilingOption.use_actionProfilingOption.use_extend
VerbosityOptionVerbosityOption.cliVerbosityOption.descriptionVerbosityOption.envVerbosityOption.get_default()VerbosityOption.getter()VerbosityOption.inverted_flagVerbosityOption.is_flagVerbosityOption.nameVerbosityOption.positionalVerbosityOption.projectVerbosityOption.readonlyVerbosityOption.scriptVerbosityOption.setter()VerbosityOption.use_actionVerbosityOption.use_extend
discover_options()get_module_option()get_option()get_option_classes()get_option_descriptor()get_option_descriptors()get_project_option()is_module_option_set()read_option()register_option()reset_module_option()set_module_option()store_option()unregister_option()
- bsb.plugins module
- bsb.postprocessing module
- bsb.reporting module
- bsb.trees module
- bsb.voxels module
VoxelDataVoxelSetVoxelSet.as_boxes()VoxelSet.as_boxtree()VoxelSet.as_spatial_coords()VoxelSet.boundsVoxelSet.concatenate()VoxelSet.coordinates_of()VoxelSet.copy()VoxelSet.crop()VoxelSet.crop_chunk()VoxelSet.dataVoxelSet.data_keysVoxelSet.empty()VoxelSet.equilateralVoxelSet.fill()VoxelSet.from_morphology()VoxelSet.get_data()VoxelSet.get_raw()VoxelSet.get_size()VoxelSet.get_size_matrix()VoxelSet.has_dataVoxelSet.index_of()VoxelSet.inside()VoxelSet.is_emptyVoxelSet.of_equal_sizeVoxelSet.one()VoxelSet.rawVoxelSet.regularVoxelSet.resize()VoxelSet.sizeVoxelSet.snap_to_grid()VoxelSet.unique()VoxelSet.volume
- Module contents
- Subpackages