Welcome to DBBS Cerebellum Scaffold’s documentation!

Contents:

• Installation Guide
  • Installing for NEURON
• Getting Started
  • First steps
  • First script
  • Network compilation
  • Network simulation
  • Using Cell Types
• Command Line Interface
  • Scaffold shell
  • List of command line commands
• Guides
  • Layers
  • Cell types
  • Connection types
  • Output
  • Output Formats
  • Simulations
  • List of placement strategies
  • List of connection strategies
  • Placement sets
  • Plotting Tools
  • Blender
• Cell Placement
  • Configuration
  • Placement Strategy
• Morphologies
  • Using morphologies
• Cell Connectivity
  • Configuration
  • Connecting cells

Indices and tables

References

• Configuration reference
  • Root attributes
  • Output attributes
  • Network architecture attributes
  • Layer attributes
  • Cell Type Attributes
  • Placement Attributes
  • Connectivity Attributes
  • Morphology attributes
  • Plotting attributes
• Reference Guide
  • Command line interface module
  • Configuration module
  • Connectivity module
  • Exceptions module
  • Functions module
  • Helpers module
  • Models module
  • Morphologies module
  • Networks module
  • Output module
  • Placement module
  • Plotting module
  • Postprocessing module
  • Scaffold class
  • Simulation module
  • Simulators
  • Trees module
  • Voxels module
• Index
• Module Index

Developer Guides

Developer Guides:

• Developer Installation
• Documentation
  • Conventions
• Obfuscation
  • Distributing obfuscated releases