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DBBS Brain Scaffold Builder 3.6.4 documentation
DBBS Brain Scaffold Builder 3.6.4 documentation

Contents:

  • Installation Guide
  • Getting Started
  • Command Line Interface
  • Guides
    • Layers
    • Cell types
    • Connection types
    • Output
    • Output Formats
    • Simulations
    • List of placement strategies
    • List of connection strategies
    • Placement sets
    • Plotting Tools
    • Blender
  • Cell Placement
  • Morphologies
  • Cell Connectivity

References

  • Configuration reference
  • Reference Guide
    • Command line interface module
    • Configuration module
    • Connectivity module
    • Exceptions module
    • Functions module
    • Helpers module
    • Models module
    • Morphologies module
    • Networks module
    • Output module
    • Placement module
    • Plotting module
    • Postprocessing module
    • Scaffold class
    • Simulation module
    • Simulators
      • NEST module
      • NEURON module
    • Trees module
    • Voxels module
  • Index
  • Module Index

Developer Guides:

  • Developer Installation
  • Documentation
  • Obfuscation

Welcome to DBBS Cerebellum Scaffold’s documentation!¶

Contents:

  • Installation Guide
    • Installing for NEURON
  • Getting Started
    • First steps
    • First script
    • Network compilation
    • Network simulation
    • Using Cell Types
  • Command Line Interface
    • Scaffold shell
    • List of command line commands
  • Guides
    • Layers
    • Cell types
    • Connection types
    • Output
    • Output Formats
    • Simulations
    • List of placement strategies
    • List of connection strategies
    • Placement sets
    • Plotting Tools
    • Blender
  • Cell Placement
    • Configuration
    • Placement Strategy
  • Morphologies
    • Using morphologies
  • Cell Connectivity
    • Configuration
    • Connecting cells

Indices and tables¶

References

  • Configuration reference
    • Root attributes
    • Output attributes
    • Network architecture attributes
    • Layer attributes
    • Cell Type Attributes
    • Placement Attributes
    • Connectivity Attributes
    • Morphology attributes
    • Plotting attributes
  • Reference Guide
    • Command line interface module
    • Configuration module
    • Connectivity module
    • Exceptions module
    • Functions module
    • Helpers module
    • Models module
    • Morphologies module
    • Networks module
    • Output module
    • Placement module
    • Plotting module
    • Postprocessing module
    • Scaffold class
    • Simulation module
    • Simulators
    • Trees module
    • Voxels module
  • Index
  • Module Index

Developer Guides¶

Developer Guides:

  • Developer Installation
  • Documentation
    • Conventions
  • Obfuscation
    • Distributing obfuscated releases
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Installation Guide
Copyright © 2020, Neurocomputational Lab, Department of Brain and Behavioral Sciences, University of Pavia | Built with Sphinx and @pradyunsg's Furo theme. | Show Source
Contents
  • Welcome to DBBS Cerebellum Scaffold’s documentation!
  • Indices and tables
  • Developer Guides